This is absolutely true, every refining system will trap values in exhaust ductwork, good systems keep it to a minimum. But that is not something you can change while operating a system, it is something that is minimized by design.If the reaction is fairly violent then any piping and the end recipient vessel could have gold solution in them , have you tested them ? A simple stannous test will confirm if you have small amounts there or larger amounts that could be some of your loses.
The reason I asked for photo's of the front of the system is to see where your condenser is and where the fumes exit the reactor. The sooner the fumes hit the cold condenser the better it performs its job.
The Italian. made systems use glass condensers and they are located directly above the fume exit point and drip directly back into the reaction vessel. They do not condense into a duct and run back down hill to the reactor as that will do as Nick cautioned, trap values.
these are a few photos of the condenser and its location on the Italian system.
here you can see the relationship between the condenser and the reaction vessel.
and here on a larger system. on both systems the glass condenser is directly above the high end of the reactor. Minimal piping connecting all condensate to the reaction.