Something oxidized, you don't get that colorized layer without something having had oxidized.
What did you use as a flux, I can see you had a boil over, it could possible have something to do with a secondary reaction that took place with your flux, whatever it might have been composed of.
Whenever you alloy two or more metals together, they take on different properties, melting temperatures, oxidizing states, etc. Literally, your alloy composition could have been anything according to what you have stated. It looks like you have some type of oxidation, but that doesn't mean it's the problem, it could be that you have a metal with a higher melt temperature that didn't melt. If the other metals did, and left the metal behind that couldn't melt you it could have protected other metals from melting, and caused your problem. I don't know enough about pyrometallurgy to comment anything further than a guess.
Maybe there was Tungsten? It seems like if you were able to melt iron though, that it should have readily alloyed with tungsten. I'm just not sure.
One thing I would be careful of is your boil over, it looks like you had a fairly substantial one. If that metal you cannot melt splattered on the inside of your furnace, you are going to want to remove it, carefully.
Can you describe a little bit more about the conditions that produced that kind of result? The flux composition, temperature, metals etc?
I think maybe Lou or 4Metals might be able to help you further.
Scott