The way the fumes get into the flasks is by vacuum. There are a lot of valves on the system which may seem complicated but in reality it is quite simple. Let me explain what all of the valves do and then you will get it.
First off, the concept in the sketch posted by Ygg is exactly what is happening here with the added convenience of an ability to add fresh chemistry to each of the 3 flasks separately.
The valve on the upper left of the photo is where the fumes enter. This valve is normally open when operating the scrubber. In normal scrubbing mode, the top middle and top right valves are open too. Ignoring the other 3 lower valves (which are closed when scrubbing) and you have a simple straight flow through system as in Ygg's sketch.
In essence, if you want to do this simple, eliminate all of the valves, all 6 of them, and you will have the system Ygg posted. All of the valves are only necessary to easily add, by suction, chemicals to each individual flask.
For example to add chemicals to the first flask, shut off the top left valve so nothing is sucking in from the reaction. The other 2 top valves stay open so vacuum is in each flask. Next put the chemical you want to add to flask 1 in the beaker and put the tubing into that beaker and open the valve in the lower row in front of flask #1. This will suck liquid from the beaker and empty it into flask #1. When you have added the quantity you want added, remove the tubing from the chemical beaker and allow the air to suck in to clean out the tubing. You can replenish flask #2 or #3 the same way by opening only the valve in front of the flask you want to feed and closing the others in front of the flasks. The top middle and top right are always open and the top left is closed to maintain negative pressure when doing additions.
When back to operating the scrubber just open the top 3 valves, the middle and right are open already and, truth be told, I don't know why I added them to begin with as they always stay open. All 3 of the lower chemical feed valves are always closed when using the scrubber.
I had a 12 liter sealed reactor and this system handled the fumes coming off a 50 ounce karat dissolve easily. Since the glass flasks are clear it was easy to see the effectiveness of each flask by looking at the fume color.